discretize.TensorMesh#

Inheritance diagram of TensorMesh
class discretize.TensorMesh(h, origin=None, **kwargs)[source]#

Tensor mesh class.

Tensor meshes are numerical grids whose cell centers, nodes, faces, edges, widths, volumes, etc… can be directly expressed as tensor products. The axes defining coordinates of the mesh are orthogonal. And cell properties along one axis do not vary with respect to the position along any other axis.

Parameters
h(dim) iterable of int, numpy.ndarray, or tuple

Defines the cell widths along each axis. The length of the iterable object is equal to the dimension of the mesh (1, 2 or 3). For a 3D mesh, the list would have the form [hx, hy, hz] .

Along each axis, the user has 3 choices for defining the cells widths:

  • int -> A unit interval is equally discretized into N cells.

  • numpy.ndarray -> The widths are explicity given for each cell

  • the widths are defined as a list of tuple of the form (dh, nc, [npad]) where dh is the cell width, nc is the number of cells, and npad (optional) is a padding factor denoting exponential increase/decrease in the cell width for each cell; e.g. [(2., 10, -1.3), (2., 50), (2., 10, 1.3)]

origin(dim) iterable, default: 0

Define the origin or ‘anchor point’ of the mesh; i.e. the bottom-left-frontmost corner. By default, the mesh is anchored such that its origin is at [0, 0, 0] .

For each dimension (x, y or z), The user may set the origin 2 ways:

  • a scalar which explicitly defines origin along that dimension.

  • {‘0’, ‘C’, ‘N’} a str specifying whether the zero coordinate along each axis is the first node location (‘0’), in the center (‘C’) or the last node location (‘N’) (see Examples).

See also

utils.unpack_widths

The function used to expand a tuple to generate widths.

Examples

An example of a 2D tensor mesh is shown below. Here we use a list of tuple to define the discretization along the x-axis and a numpy array to define the discretization along the y-axis. We also use a string argument to center the x-axis about x = 0 and set the top of the mesh to y = 0.

>>> from discretize import TensorMesh
>>> import matplotlib.pyplot as plt
>>> ncx = 10      # number of core mesh cells in x
>>> dx = 5        # base cell width x
>>> npad_x = 3    # number of padding cells in x
>>> exp_x = 1.25  # expansion rate of padding cells in x
>>> ncy = 24      # total number of mesh cells in y
>>> dy = 5        # base cell width y
>>> hx = [(dx, npad_x, -exp_x), (dx, ncx), (dx, npad_x, exp_x)]
>>> hy = dy * np.ones(ncy)
>>> mesh = TensorMesh([hx, hy], origin='CN')
>>> fig = plt.figure(figsize=(5,5))
>>> ax = fig.add_subplot(111)
>>> mesh.plot_grid(ax=ax)
>>> plt.show()

(Source code, png, pdf)

../../_images/discretize-TensorMesh-1.png

Attributes

area

area has been deprecated.

areaFx

areaFx has been deprecated.

areaFy

areaFy has been deprecated.

areaFz

areaFz has been deprecated.

average_cell_to_edge

Averaging operator from cell centers to edges (scalar quantities).

average_cell_to_face

Averaging operator from cell centers to faces (scalar quantities).

average_cell_vector_to_face

Averaging operator from cell centers to faces (vector quantities).

average_edge_to_cell

Averaging operator from edges to cell centers (scalar quantities).

average_edge_to_cell_vector

Averaging operator from edges to cell centers (vector quantities).

average_edge_to_face_vector

Averaging operator from edges to faces (vector quantities).

average_edge_x_to_cell

Averaging operator from x-edges to cell centers (scalar quantities).

average_edge_y_to_cell

Averaging operator from y-edges to cell centers (scalar quantities).

average_edge_z_to_cell

Averaging operator from z-edges to cell centers (scalar quantities).

average_face_to_cell

Averaging operator from faces to cell centers (scalar quantities).

average_face_to_cell_vector

Averaging operator from faces to cell centers (vector quantities).

average_face_x_to_cell

Averaging operator from x-faces to cell centers (scalar quantities).

average_face_y_to_cell

Averaging operator from y-faces to cell centers (scalar quantities).

average_face_z_to_cell

Averaging operator from z-faces to cell centers (scalar quantities).

average_node_to_cell

Averaging operator from nodes to cell centers (scalar quantities).

average_node_to_edge

Averaging operator from nodes to edges (scalar quantities).

average_node_to_face

Averaging operator from nodes to faces (scalar quantities).

axis_u

Orientation of the first axis.

axis_v

Orientation of the second axis.

axis_w

Orientation of the third axis.

boundary_edge_vector_integral

Integrate a vector function on the boundary.

boundary_edges

Boundary edge locations.

boundary_face_outward_normals

Outward normal vectors of boundary faces.

boundary_face_scalar_integral

Represent the operation of integrating a scalar function on the boundary.

boundary_faces

Boundary face locations.

boundary_node_vector_integral

Integrate a vector function dotted with the boundary normal.

boundary_nodes

Boundary node locations.

cellBoundaryInd

cellBoundaryInd has been deprecated.

cellGrad

cellGrad has been deprecated.

cellGradBC

cellGradBC has been deprecated.

cellGradx

cellGradx has been deprecated.

cellGrady

cellGrady has been deprecated.

cellGradz

cellGradz has been deprecated.

cell_boundary_indices

Return the indices of the x, (y and z) boundary cells.

cell_centers

Return gridded cell center locations.

cell_centers_x

Return x-coordinates of the cell centers along the x-direction.

cell_centers_y

Return y-coordinates of the cell centers along the y-direction.

cell_centers_z

Return z-coordinates of the cell centers along the z-direction.

cell_gradient

Cell gradient operator (cell centers to faces).

cell_gradient_BC

Boundary conditions matrix for the cell gradient operator (Deprecated).

cell_gradient_x

X-derivative operator (cell centers to x-faces).

cell_gradient_y

Y-derivative operator (cell centers to y-faces).

cell_gradient_z

Z-derivative operator (cell centers to z-faces).

cell_volumes

Return cell volumes.

dim

The dimension of the mesh (1, 2, or 3).

edge

edge has been deprecated.

edgeCurl

edgeCurl has been deprecated.

edgeEx

edgeEx has been deprecated.

edgeEy

edgeEy has been deprecated.

edgeEz

edgeEz has been deprecated.

edge_curl

Edge curl operator (edges to faces).

edge_lengths

Return lengths of all edges in the mesh.

edge_tangents

Unit tangent vectors for all mesh edges.

edge_x_lengths

Return the x-edge lengths.

edge_y_lengths

Return the y-edge lengths.

edge_z_lengths

Return the z-edge lengths.

edges

Gridded edge locations.

edges_x

Gridded x-edge locations.

edges_y

Gridded y-edge locations.

edges_z

Gridded z-edge locations.

faceBoundaryInd

faceBoundaryInd has been deprecated.

faceDiv

faceDiv has been deprecated.

faceDivx

faceDivx has been deprecated.

faceDivy

faceDivy has been deprecated.

faceDivz

faceDivz has been deprecated.

face_areas

Return areas of all faces in the mesh.

face_boundary_indices

Return the indices of the x, (y and z) boundary faces.

face_divergence

Face divergence operator (faces to cell-centres).

face_normals

Unit normal vectors for all mesh faces.

face_x_areas

Return the areas of the x-faces.

face_x_divergence

X-derivative operator (x-faces to cell-centres).

face_y_areas

Return the areas of the y-faces.

face_y_divergence

Y-derivative operator (y-faces to cell-centres).

face_z_areas

Return the areas of the z-faces.

face_z_divergence

Z-derivative operator (z-faces to cell-centres).

faces

Gridded face locations.

faces_x

Gridded x-face locations.

faces_y

Gridded y-face locations.

faces_z

Gridded z-face locations.

h

Cell widths along each axis direction.

h_gridded

Return dimensions of all mesh cells as staggered grid.

hx

Width of cells in the x direction.

hy

Width of cells in the y direction.

hz

Width of cells in the z direction.

nCx

Number of cells in the x direction.

nCy

Number of cells in the y direction.

nCz

Number of cells in the z direction.

nNx

Number of nodes in the x-direction.

nNy

Number of nodes in the y-direction.

nNz

Number of nodes in the z-direction.

n_cells

Total number of cells in the mesh.

n_edges

Total number of edges in the mesh.

n_edges_per_direction

The number of edges in each direction.

n_edges_x

Number of x-edges in the mesh.

n_edges_y

Number of y-edges in the mesh.

n_edges_z

Number of z-edges in the mesh.

n_faces

Total number of faces in the mesh.

n_faces_per_direction

The number of faces in each axis direction.

n_faces_x

Number of x-faces in the mesh.

n_faces_y

Number of y-faces in the mesh.

n_faces_z

Number of z-faces in the mesh.

n_nodes

Total number of nodes in the mesh.

nodalGrad

nodalGrad has been deprecated.

nodalLaplacian

nodalLaplacian has been deprecated.

nodal_gradient

Nodal gradient operator (nodes to edges).

nodal_laplacian

Nodal scalar Laplacian operator (nodes to nodes).

nodes

Return gridded node locations.

nodes_x

Return x-coordinates of the nodes along the x-direction.

nodes_y

Return y-coordinates of the nodes along the y-direction.

nodes_z

Return z-coordinates of the nodes along the z-direction.

normals

normals has been deprecated.

orientation

Rotation matrix defining mesh axes relative to Cartesian.

origin

Origin or 'anchor point' of the mesh.

project_edge_to_boundary_edge

Projection matrix from all edges to boundary edges.

project_face_to_boundary_face

Projection matrix from all faces to boundary faces.

project_node_to_boundary_node

Projection matrix from all nodes to boundary nodes.

reference_is_rotated

Indicate whether mesh uses standard coordinate axes.

reference_system

Coordinate reference system.

rotation_matrix

Alias for orientation.

shape_cells

Number of cells in each coordinate direction.

shape_edges_x

Number of x-edges along each axis direction.

shape_edges_y

Number of y-edges along each axis direction.

shape_edges_z

Number of z-edges along each axis direction.

shape_faces_x

Number of x-faces along each axis direction.

shape_faces_y

Number of y-faces along each axis direction.

shape_faces_z

Number of z-faces along each axis direction.

shape_nodes

The number of nodes along each axis direction.

stencil_cell_gradient

Stencil for cell gradient operator (cell centers to faces).

stencil_cell_gradient_x

Differencing operator along x-direction (cell centers to x-faces).

stencil_cell_gradient_y

Differencing operator along y-direction (cell centers to y-faces).

stencil_cell_gradient_z

Differencing operator along z-direction (cell centers to z-faces).

tangents

tangents has been deprecated.

vectorCCx

vectorCCx has been deprecated.

vectorCCy

vectorCCy has been deprecated.

vectorCCz

vectorCCz has been deprecated.

vectorNx

vectorNx has been deprecated.

vectorNy

vectorNy has been deprecated.

vectorNz

vectorNz has been deprecated.

vol

vol has been deprecated.

x0

Alias for the origin.

Methods

cell_gradient_weak_form_robin([alpha, beta, ...])

Create Robin conditions pieces for weak form of the cell gradient operator (cell centers to faces).

closest_points_index(locations[, grid_loc, ...])

Find the indicies for the nearest grid location for a set of points.

copy()

Make a copy of the current mesh.

deserialize(items, **kwargs)

Create this mesh from a dictionary of attributes.

edge_divergence_weak_form_robin([alpha, ...])

Create Robin conditions pieces for weak form of the edge divergence operator (edges to nodes).

equals(other_mesh)

Compare the current mesh with another mesh to determine if they are identical.

from_omf(element)

Convert an omf object to a discretize mesh.

getBCProjWF(*args, **kwargs)

getBCProjWF has been deprecated.

getBCProjWF_simple(*args, **kwargs)

getBCProjWF_simple has been deprecated.

getEdgeInnerProduct(*args, **kwargs)

getEdgeInnerProduct has been deprecated.

getEdgeInnerProductDeriv(*args, **kwargs)

getEdgeInnerProductDeriv has been deprecated.

getFaceInnerProduct(*args, **kwargs)

getFaceInnerProduct has been deprecated.

getFaceInnerProductDeriv(*args, **kwargs)

getFaceInnerProductDeriv has been deprecated.

getInterpolationMat(*args, **kwargs)

getInterpolationMat has been deprecated.

getTensor(*args, **kwargs)

getTensor has been deprecated.

get_BC_projections(BC[, discretization])

Create the weak form boundary condition projection matrices.

get_BC_projections_simple([discretization])

Create weak form boundary condition projection matrices for mixed boundary condition.

get_edge_inner_product([model, ...])

Generate the edge inner product matrix or its inverse.

get_edge_inner_product_deriv(model[, ...])

Get a function handle to multiply vector with derivative of edge inner product matrix (or its inverse).

get_face_inner_product([model, ...])

Generate the face inner product matrix or its inverse.

get_face_inner_product_deriv(model[, ...])

Get a function handle to multiply a vector with derivative of face inner product matrix (or its inverse).

get_interpolation_matrix(loc[, ...])

Construct a linear interpolation matrix from mesh.

get_tensor(key)

Return the base 1D arrays for a specified mesh tensor.

isInside(*args, **kwargs)

isInside has been deprecated.

is_inside(pts[, location_type])

Determine which points lie within the mesh.

plotGrid(*args, **kwargs)

plotGrid has been deprecated.

plotImage(*args, **kwargs)

plotImage has been deprecated.

plotSlice(*args, **kwargs)

plotSlice has been deprecated.

plot_3d_slicer(v[, xslice, yslice, zslice, ...])

Plot slices of a 3D volume, interactively (scroll wheel).

plot_grid([ax, nodes, faces, centers, ...])

Plot the grid for nodal, cell-centered and staggered grids.

plot_image(v[, v_type, grid, view, ax, ...])

Plot quantities defined on a given mesh.

plot_slice(v[, v_type, normal, ind, ...])

Plot a slice of fields on the given 3D mesh.

point2index(locs)

Find cells that contain the given points.

projectEdgeVector(*args, **kwargs)

projectEdgeVector has been deprecated.

projectFaceVector(*args, **kwargs)

projectFaceVector has been deprecated.

project_edge_vector(edge_vectors)

Project vectors to the edges of the mesh.

project_face_vector(face_vectors)

Project vectors onto the faces of the mesh.

r(*args, **kwargs)

r has been deprecated.

readModelUBC(*args, **kwargs)

readModelUBC has been deprecated.

readUBC(file_name[, directory])

Read 2D or 3D tensor mesh from UBC-GIF formatted file.

readVTK(file_name[, directory])

Read VTK rectilinear file (vtr or xml) and return a discretize tensor mesh (and models).

read_UBC(file_name[, directory])

Read 2D or 3D tensor mesh from UBC-GIF formatted file.

read_model_UBC(file_name[, directory])

Read UBC-GIF formatted model file for 2D or 3D tensor mesh.

read_vtk(file_name[, directory])

Read VTK rectilinear file (vtr or xml) and return a discretize tensor mesh (and models).

reshape(x[, x_type, out_type, return_format])

Reshape tensor quantities.

save([file_name, verbose])

Save the mesh to json.

serialize()

Represent the mesh's attributes as a dictionary.

setCellGradBC(*args, **kwargs)

setCellGradBC has been deprecated.

set_cell_gradient_BC(BC)

Set boundary conditions for derivative operators acting on cell-centered quantities.

toVTK([models])

Convert mesh (and models) to corresponding VTK or PyVista data object.

to_dict()

Represent the mesh's attributes as a dictionary.

to_omf([models])

Convert to an omf data object.

to_vtk([models])

Convert mesh (and models) to corresponding VTK or PyVista data object.

validate()

Return the validation state of the mesh.

vtk_to_tensor_mesh(vtrGrid)

Convert vtk object to a TensorMesh.

writeModelUBC(*args, **kwargs)

writeModelUBC has been deprecated.

writeUBC(*args, **kwargs)

writeUBC has been deprecated.

writeVTK(file_name[, models, directory])

Convert mesh (and models) to corresponding VTK or PyVista data object then writes to file.

write_UBC(file_name[, models, directory, ...])

Write 2D or 3D tensor mesh (and models) to UBC-GIF formatted file(s).

write_model_UBC(file_name, model[, directory])

Write 2D or 3D tensor model to UBC-GIF formatted file.

write_vtk(file_name[, models, directory])

Convert mesh (and models) to corresponding VTK or PyVista data object then writes to file.

Galleries and Tutorials using discretize.TensorMesh#

Operators: Cahn Hilliard

Operators: Cahn Hilliard

Operators: Cahn Hilliard
Basic Forward 2D DC Resistivity

Basic Forward 2D DC Resistivity

Basic Forward 2D DC Resistivity
Basic: PlotImage

Basic: PlotImage

Basic: PlotImage
3D Visualization with PyVista

3D Visualization with PyVista

3D Visualization with PyVista
Slicer demo

Slicer demo

Slicer demo
Plotting: Streamline thickness

Plotting: Streamline thickness

Plotting: Streamline thickness
Overview of Mesh Types

Overview of Mesh Types

Overview of Mesh Types
Tensor meshes

Tensor meshes

Tensor meshes
Averaging Matricies

Averaging Matricies

Averaging Matricies
Differential Operators

Differential Operators

Differential Operators
Basic Inner Products

Basic Inner Products

Basic Inner Products
Constitutive Relations

Constitutive Relations

Constitutive Relations
Differential Operators

Differential Operators

Differential Operators
Advanced Examples

Advanced Examples

Advanced Examples
Gauss' Law of Electrostatics

Gauss’ Law of Electrostatics

Gauss' Law of Electrostatics
Advection-Diffusion Equation

Advection-Diffusion Equation

Advection-Diffusion Equation